error from cron job on cliupdate.php concerning libpng
I guess that it occurs when favicon/thumbnail for some feed is resized and libpng does not support it. I would still say it is either a bug in libpng or PHP.
Try adding the following code before $f3->run(); in index.php:
https://gist.github.com/jtojnar/cbf19757c01b7aaa47832d5baf26f3e3